Scaffold Ga0209535_1005547

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1005547
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7729
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (21.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015276	Metagenome / Metatranscriptome	256	Y
F092022	Metagenome	107	Y
F102069	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10055475	F015276	N/A	MKKVIVEYDNDVVSTYDIVLFRSYKKGKKEVLQQDLPELINHFSVRSYKFVEPTRKRSKGDNTSSTYISKNKKENISMPIEIAEEIVTFAKGDGAGFTKEIVENWNSYFKFNLHSKFESYGFTGASRLNTIFKI
Ga0209535_10055476	F102069	N/A	MDTIIYIFAGIGVLATSIALYYFITDQYAIWEMNTYDRLKKKFDW
Ga0209535_10055477	F092022	N/A	LVNPIVQEFIDFKEVQTLKLVNREIQFKKFLYLVEETKQEAIEESGLSKKEFLKQVSNG