Scaffold Ga0209535_1003731

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1003731
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9644
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (56.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007826	Metagenome	344	Y
F023719	Metagenome	209	Y
F068130	Metagenome	125	N
F086191	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100373115	F023719	N/A	MVTIPKYRDKIKTVRTGQDKKTGKETFTTINNSHHPISKKTKDRNREKARYKSGRIYDGRSRVPTQEYKDGWNEIFGKKNND
Ga0209535_100373118	F007826	AGGAG	MNKQTALTFKLLNLIKKCREKGKFQLAIKIIDKYKIDREKLREDYYD
Ga0209535_10037316	F068130	AGAAGG	MKQITLQQLQSLIAYLKGRPWEEAHPLITMLSSLPAIEPKKDTPVTPKK
Ga0209535_10037319	F086191	N/A	MMSAKDLEEFAINTGQKEDRGPLDLTLLIEQADKKIEDLKEVINGHQALRASDRQQIWDLKKLLGEKRSVEQTNEDLKARLTEVMKDNIRLAKQTDEYLNRLRNKGVL