Scaffold Ga0209535

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1003328 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025120 Open in IMG/M

Scaffold ID

Ga0209535_1003328 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10245
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (85.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

10245

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (85.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F028943	Metagenome	190	N
F064622	Metagenome	128	Y
F084834	Metagenome	112	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100332810	F084834	AGG	MANPVKGAISQLGERIIDTSKGMFSAIRDAFGYESAGKIQSLRTDAQSFPSVAEPTIDNAPLMAAHNTSAEGILVANEIGGIPSPSIAISDPANLQNFGEISLIMDPNKLDPNMNIYPTDAYTGRQPKGKSKIANEKQFKERMKADVNFGHIDDTARYLLSGSPEDADLDLKIVNAAIANGLVNPKDFNNFGELFGEASRKIERDINNMSFLNQYDGISEYAEVKRMLPPKDPYYSDGSHRPDRPETISTVLKDMRQGEYGPMYMPASEAHAQNYPGALRAATTRPFKSIDEIKDSRGQIYVEERDNPNPSYVSNPLEDFFDQFSSVKYSLLDDLTEKFTKTEIRTRRSRNEDGEFITTQEPITRMMGMETANELLLALGRNDADIARTAAVSEGFVSMDDIPALRDAVNRLGEVMQTAPTKYFEAKPNAAMSLSDFDVALVPQEVTENPQLMEIFKENNLPVSTYQDFGPNKERYREGVMRGMNENLFSVPLAGTLGYGALQGVGDNDGESGS
Ga0209535_100332816	F028943	AGG	MANPLKGLFSTIGEGVIDLGEGVYKAVDDVIKQMNGNVLQQGLRYSDDDSANAIIQNYLENQSRGSGLTKGGYVEETPIGKMTVTRGTVPLQEIGAEIDFTTRVQTQPEPFDYQKAIDEGAQFMSIKGDRASGTGSILSVNEIPLVNPVAREGGYQYATEGQNVLDSRFWGSDPAILEKQRKKAEVLSGQVKDPKTGEILEEGVPVYGTFFNAAGDNVNFSTMVSDVTLNMIPNMKITKKSAKQFDEKLRERIPDWPGLGKMEASDLEKAREYLFAPNRGEARKAFSEEMAKPRSMKLGFPDQASVRAAISTPDMLGMGSGDASGRMIAQIDYNAPINPVSNHTTYPAGLQRVEGTPVYRMADESGNFRDVPTGLFFRDFYNDRIIDGVVPPEATTIRSMELRQANQPATKELDDIIQEYLYQTDNTRRGYPYNR
Ga0209535_10033288	F064622	AGGAGG	VAGFWETYYKMSSPPMYDMTGQDPEVLKGMARTALDSATIVGVGGEIEAGLRAPFSDKTFQEIDSEINQQQADFKENYPAEYTTSSGLGMGSTIMAGAPMAVTRMVGGKILPNVVFGTGTGALGGFFSGTGEGETTEERIQSGKEEIAPMAVGAGTVTLGMMSAMKAAPPVIRFIGNMASKVMGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209535_1003328

Overview

Ecosystem & Geography

Associated Families

Sequences