NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1001212

Scaffold Ga0209535_1001212


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1001212 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17720
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (45.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006772Metagenome365Y
F040392Metagenome162N
F100005Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100121217F100005AGCAGMSDRHYEKPLPETITTILEDGSVSVSVGNITGVVSSYHLIEPKAHQLQKAWLRHQMDLVDASN
Ga0209535_100121220F040392N/AMTEKQVLCSIKTAHHYGGEFFRKLSEAALLADPRNRSRVLDAFPEIVSKYGPGSAFYNEY
Ga0209535_100121225F006772AGGMERLKTAIRTATTGDLQRAAMLLEGAKKVRAGCTNQRSQARRAQATAWEKKTDSSITW

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