Basic Information | |
---|---|
Taxon OID | 3300025120 Open in IMG/M |
Scaffold ID | Ga0209535_1001212 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-28 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 17720 |
Total Scaffold Genes | 40 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (45.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 48.9699 | Long. (o) | -130.6666 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006772 | Metagenome | 365 | Y |
F040392 | Metagenome | 162 | N |
F100005 | Metagenome | 103 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209535_100121217 | F100005 | AGCAG | MSDRHYEKPLPETITTILEDGSVSVSVGNITGVVSSYHLIEPKAHQLQKAWLRHQMDLVDASN |
Ga0209535_100121220 | F040392 | N/A | MTEKQVLCSIKTAHHYGGEFFRKLSEAALLADPRNRSRVLDAFPEIVSKYGPGSAFYNEY |
Ga0209535_100121225 | F006772 | AGG | MERLKTAIRTATTGDLQRAAMLLEGAKKVRAGCTNQRSQARRAQATAWEKKTDSSITW |
⦗Top⦘ |