Scaffold Ga0209535

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1000997 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025120 Open in IMG/M

Scaffold ID

Ga0209535_1000997 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19461
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (20.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

19461

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (20.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F017335	Metagenome / Metatranscriptome	241	Y
F018962	Metagenome / Metatranscriptome	232	Y
F022460	Metagenome / Metatranscriptome	214	Y
F048317	Metagenome / Metatranscriptome	148	Y
F056630	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100099717	F048317	N/A	MIKDIYSRDALAPKFNDATLEVSDTLSQLIIKIENCLFTRKGDVLGAPGIGCNLDELIFSLVLNENTIQNNINSQITAYCLPDIAGFNIDTKVSFFSTLERNGCLVDIFVNEQRVIGALF
Ga0209535_100099719	F022460	AGGA	MATVKDNRTGFPSLYKATYEEGWQLKNTGYDYSTTLLNNSMSKYMFRNRHLKVFLEDYLNPIMVFYVNRVKYLRIYFNFAVPKWYQKIN
Ga0209535_10009973	F056630	N/A	MQKDNIEETSVEVKHWQWIKGDDSGLVVTIKEEGPKWITFDNGRRLATELKSEFIQELDAEIAGEFVKPQTSSIDPLNISAPPQTVVEIPTKQISPIRVLFNKQKKNNKVKLLLEFPVNIPTKGVYELMSTSFDKDEVNEQLQSFILDQLPEDEITDCLFNSIKSLIESKYKAE
Ga0209535_10009975	F018962	N/A	MIKIVLEPARNGVIKKVIDDNHGGGKEHFTSTDVYESNENDKNQYSYVKRFFFDLCDDLGLELGSKFDKTVLDINTKWGTHYEPTAKDIEFKIKRLKSELKALEEWKNI
Ga0209535_10009976	F008190	AGG	MEEHIEFNFIYSSDALRVKSFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAIGRNISTTIFYVLGDLNKETVNGIQEYVESLSDKPITYKIYHSPDIIVNGTAELFDDIIEFE
Ga0209535_10009977	F004606	N/A	MKTHRIFNKGQNVYCLLASHTNPNILLPVKGIILDSKWDPVNPLYQIRIIKFYDNMKFLKNHFFDMNFRHVFENRARKMILKAEDYKTVKVLENRLNEKDRERFYVVIESVMCTKTKVGLSELFEKVQLYMISKNLKEVREISARPFFKGPLSLDSVREFDARYKIGWKDKFEKSNLSIDKYLNSLG
Ga0209535_10009979	F017335	N/A	MNIKSLTLKNKLSNDRTGEQYFDLTAPSFKYKRELGVKALHYVQQDQVGRIDKISQVYYGTGAYIDAICVVNNIFNPFTIQEGDILAIPKLDQLDLVYKRPNAAERPSITLAQYVDTGRQSEQDQSRIQRLIQKAKTKKTGVKSPIPPNMLQQGQEAKVYEGGKIKLGANLPTRTRTNT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209535_1000997

Overview

Ecosystem & Geography

Associated Families

Sequences