Scaffold Ga0209535_1000410

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000410
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30037
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (15.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009787	Metagenome	313	Y
F016797	Metagenome	244	N
F018540	Metagenome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100041013	F009787	N/A	MRLFSLFLILGLYSCSAKYHYRKALKKGLEVLKTSDTIRISTIDSIPVIKHDTIVYQKFFSSKDTVVMYKNVFVPQTRLETRIEYKLKRDTLKMITRVEVHKAKADAKINKKPNYWGMLIFIACVFLVGLFGTKLLKKYL
Ga0209535_100041021	F018540	AGG	MMTMEALKLEFWDSFNEELYCNYLIQKDERMNTYKIIYKYYKGSDTSAEMCHAIKYVQADDRQEAIKAFGLWEKLIISIEKV
Ga0209535_100041029	F016797	N/A	MESLDILKAKINLQTTIIKFTSSIEELQKKHPERHDLINSMLESLEDVAEFQSVFMQLEEEFILECKTNLRLQMQISEQKHEIDKLNILVKNLKEGI