Scaffold Ga0209535

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1000336 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025120 Open in IMG/M

Scaffold ID

Ga0209535_1000336 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32820
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (12.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

32820

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (12.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F022460	Metagenome / Metatranscriptome	214	Y
F048317	Metagenome / Metatranscriptome	148	Y
F076611	Metagenome	118	Y
F105240	Metagenome / Metatranscriptome	100	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100033616	F076611	N/A	MAENLFDKASYSLVRTNPKLTANVKVVSDGTDIYLESFSANTRLSSQKFKAFKVDGTSTYDQDVFKFFDNGKFPIEAAYEIFQEYEDDAVLSTYGNQYEMFYCAGTRSIASESYSQSLGTLAPLWLNEQIPNYFVIFRLDNPAAVNNFRAVTENADTVNAQTSAEFSKNVLENCTAIKTFDLTEGTTLGSYIRNYRNQESFPEVPLNMTWRKDEPILWNGISYKSGGFTSSGNFAYKDLIVKDSTIIQDEYLFTQGFQNNGIILANLLNMEFLFDDPTASDYSINRYFGMYVNDIEEGQFDLSGEAFYKGTSTETTQQPKITNVTEVSQFLNTPFELTNENGILLYLDPLKTETITGLPTPTRVSEVESIFYVKDKEDDFHTIKKGSFWEQDQIRLFDTKVDISLFTGYQEPDTFANASIISSKGFAQMYIKVLDNVQEGSKISFYDGVDFTGAIFADSTIATVPGKSIERFFNPNGTLQEVAQSITSAINRGINENERFFVASYNDTTVYVKSRFSGTRFNRMGFELDIQFPEQFIQLETYPVTTVAVPAKTFVGGNDVNNSLLKVELGDQDRFVKGNSVQTTGGFAEIGDWVPYTDEPIYDGFNQIIGYTDIDKYAIITCNNNQIMVTRSGQVALYSDYKPSFGRFSFFPVKDFDFDFYSKQYSQKGELDFEELEYNKTIPNAVRPFDIPDYVGVGQTPEIRTFYDNGGFYNLIGLLNDDGDVTEDEYIKSEYDRLQENFLTSQAAISRIAPYINKWAWVNDGKDVRNHPYRLDVNEAFGLNNFAPSKWDKVQEASGYTQEWYYLSEFPLYFDQAAIKSSWSYIDTAPSDNIEAVPATGQAFVPGTFQDTTVNNFNNYFIIQRFTTGGITEIDRQLRYGRFRGGNEKNFSETFLRGVRIIAKPKAIPTQKPNFDSKALSYVQDGSFNDYRFSVILVPNLPNTPEFQVKFIKNEKWKTVVMLISINYDIQCLNQTTESIIDRTSLYSLNSQYRVNADCTPKLVNGKPTYETTGLSGALALTQTTGSAAAGYTIKGQADSNGIPTNFINDIRILEDGTYGEIKFVIAGDAYSIGGIQTIIDSNTFVAKTFTVTPGGTSTSYDMQVPTSVPSNAQLKVASYVISQGGYNQYTNILNKASFGELFDSVNEGDPSIIYETISEDGSQVRNIDGTLSQTFSITLRAQDDILKSIYIGKLPDPAKPTAFNLTDAVGFDLSLQKTPRITPIARHAGYYEPYALPLLSFRDPYQNLDFGNPQEDETYKLKVLELCKYKNAQFNSSDSSFGQIPNFFYHKVNEQDPSTILELSRASAFPSLYPLINEIGIDYRNFYAFSSNWEPSYFVKNIDKSQTQRVIGTRSMFERKSFFGSKYLKVPETIILDTFKPHPFEKRAIRQPSLIDGTFMYQDQPSVTINKKIIQSVGVRQLREIKRRPSAPIETFYLFNQKRLIEYLFTPIKEQFLKYVKDSFGWGNLETLDDDVNEYIRENILKLYKVEKVEFYNLASRTKGSSTYTTAELTNAEKISKGLTINNNVSSKTLNTNLFDLKLIYNKRTGFSESYGFSVTIVKK
Ga0209535_100033619	F105240	N/A	MAISVTEILGTDSLSGSRLVINDNFNVLASEINAMEVYFAPTAGTITNLNNLSTEALRVGLSTILLDINASTFDILTNVKMSGNLNLNGGGLFRNDTNPTPLNDTTAGGNAINVGTSTAIPPYSINRCGNTDITSPVDIQLYQGAVGQEIFFMCTEGSGDVKIASPSGLNYIVTTGTTNTITLNAVGQTVHLVSIDNGSGQGVWFIAGGTGYVLS
Ga0209535_100033621	F022460	AGGA	MATVKNNNTGFPSLYRATYEEGWDLKNTGFDYSKVLLNISMSKQMFRNIHLKTFLTDYLNPIMVFYINRVKYLRIYFNFAVPKWYQKIN
Ga0209535_100033623	F048317	N/A	MIRDIYSRDIEAPKYNEQTLEVSDTLSQLIIKIENCLFTNKGDVLGAPGIGCNLDELVFSLVLNENTIQNNINTQITAYCLPDIAGFDINTKVSFFSTLERDGCLVDIFVNEQRVIGALF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209535_1000336

Overview

Ecosystem & Geography

Associated Families

Sequences