NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1000336

Scaffold Ga0209535_1000336


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1000336 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32820
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (12.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022460Metagenome / Metatranscriptome214Y
F048317Metagenome / Metatranscriptome148Y
F076611Metagenome118Y
F105240Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100033616F076611N/AMAENLFDKASYSLVRTNPKLTANVKVVSDGTDIYLESFSANTRLSSQKFKAFKVDGTSTYDQDVFKFFDNGKFPIEAAYEIFQEYEDDAVLSTYGNQYEMFYCAGTRSIASESYSQSLGTLAPLWLNEQIPNYFVIFRLDNPAAVNNFRAVTENADTVNAQTSAEFSKNVLENCTAIKTFDLTEGTTLGSYIRNYRNQESFPEVPLNMTWRKDEPILWNGISYKSGGFTSSGNFAYKDLIVKDSTIIQDEYLFTQGFQNNGIILANLLNMEFLFDDPTASDYSINRYFGMYVNDIEEGQFDLSGEAFYKGTSTETTQQPKITNVTEVSQFLNTPFELTNENGILLYLDPLKTETITGLPTPTRVSEVESIFYVKDKEDDFHTIKKGSFWEQDQIRLFDTKVDISLFTGYQEPDTFANASIISSKGFAQMYIKVLDNVQEGSKISFYDGVDFTGAIFADSTIATVPGKSIERFFNPNGTLQEVAQSITSAINRGINENERFFVASYNDTTVYVKSRFSGTRFNRMGFELDIQFPEQFIQLETYPVTTVAVPAKTFVGGNDVNNSLLKVELGDQDRFVKGNSVQTTGGFAEIGDWVPYTDEPIYDGFNQIIGYTDIDKYAIITCNNNQIMVTRSGQVALYSDYKPSFGRFSFFPVKDFDFDFYSKQYSQKGELDFEELEYNKTIPNAVRPFDIPDYVGVGQTPEIRTFYDNGGFYNLIGLLNDDGDVTEDEYIKSEYDRLQENFLTSQAAISRIAPYINKWAWVNDGKDVRNHPYRLDVNEAFGLNNFAPSKWDKVQEASGYTQEWYYLSEFPLYFDQAAIKSSWSYIDTAPSDNIEAVPATGQAFVPGTFQDTTVNNFNNYFIIQRFTTGGITEIDRQLRYGRFRGGNEKNFSETFLRGVRIIAKPKAIPTQKPNFDSKALSYVQDGSFNDYRFSVILVPNLPNTPEFQVKFIKNEKWKTVVMLISINYDIQCLNQTTESIIDRTSLYSLNSQYRVNADCTPKLVNGKPTYETTGLSGALALTQTTGSAAAGYTIKGQADSNGIPTNFINDIRILEDGTYGEIKFVIAGDAYSIGGIQTIIDSNTFVAKTFTVTPGGTSTSYDMQVPTSVPSNAQLKVASYVISQGGYNQYTNILNKASFGELFDSVNEGDPSIIYETISEDGSQVRNIDGTLSQTFSITLRAQDDILKSIYIGKLPDPAKPTAFNLTDAVGFDLSLQKTPRITPIARHAGYYEPYALPLLSFRDPYQNLDFGNPQEDETYKLKVLELCKYKNAQFNSSDSSFGQIPNFFYHKVNEQDPSTILELSRASAFPSLYPLINEIGIDYRNFYAFSSNWEPSYFVKNIDKSQTQRVIGTRSMFERKSFFGSKYLKVPETIILDTFKPHPFEKRAIRQPSLIDGTFMYQDQPSVTINKKIIQSVGVRQLREIKRRPSAPIETFYLFNQKRLIEYLFTPIKEQFLKYVKDSFGWGNLETLDDDVNEYIRENILKLYKVEKVEFYNLASRTKGSSTYTTAELTNAEKISKGLTINNNVSSKTLNTNLFDLKLIYNKRTGFSESYGFSVTIVKK
Ga0209535_100033619F105240N/AMAISVTEILGTDSLSGSRLVINDNFNVLASEINAMEVYFAPTAGTITNLNNLSTEALRVGLSTILLDINASTFDILTNVKMSGNLNLNGGGLFRNDTNPTPLNDTTAGGNAINVGTSTAIPPYSINRCGNTDITSPVDIQLYQGAVGQEIFFMCTEGSGDVKIASPSGLNYIVTTGTTNTITLNAVGQTVHLVSIDNGSGQGVWFIAGGTGYVLS
Ga0209535_100033621F022460AGGAMATVKNNNTGFPSLYRATYEEGWDLKNTGFDYSKVLLNISMSKQMFRNIHLKTFLTDYLNPIMVFYINRVKYLRIYFNFAVPKWYQKIN
Ga0209535_100033623F048317N/AMIRDIYSRDIEAPKYNEQTLEVSDTLSQLIIKIENCLFTNKGDVLGAPGIGCNLDELVFSLVLNENTIQNNINTQITAYCLPDIAGFDINTKVSFFSTLERDGCLVDIFVNEQRVIGALF

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