Scaffold Ga0209535_1000229

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000229
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38364
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (67.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017578	Metagenome / Metatranscriptome	240	Y
F019251	Metagenome / Metatranscriptome	231	Y
F038900	Metagenome	165	Y
F041739	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100022916	F017578	AGG	MQALNQITGAIEDIDKIMNEHLKNYTQVHRHYTPYDPNEWTALLKHVHRDFGRPAERWCWQLDAGWQKSMMEDPEWRGVPVNEWHVIFYFKEESDAVMFGLKY
Ga0209535_100022927	F019251	AGG	MDRDTKYKKVGDKHYVEFYEDNTMIGVIDYSDHSMHYVEDAVENFRSGIMTKETIERYNINGKN
Ga0209535_100022954	F041739	N/A	MTRELKFTSANFNVGTDDDSCYLDPNDPVHEFMITGNASNLNKPKQISVVEQATEHQRKLEIAKAQGIKPGTPAWFML
Ga0209535_100022955	F038900	AGG	MYLQTKDVSLYTKVTSRLKNGRHYRDFAQERAGLQLQQFTAQKTAMEHSIANKKEILWRAEALFIPTVLLTPSTIQFLGNNDVVPDQIMTNEQLKTFDTSENHYSRSTWRSEVSDQGNECLELNLNYENYAVLPSEQGFFHYVDGKFKRIKNRHEQIEMLWDYGFPSKRGRPIKVGRVGHSGSKTEITGLVDWLYKLRMLNHGSEIQYKTQQIYNTLNRHYAWPEHW