Scaffold Ga0209126_1013578

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209126_1013578

Scaffold Ga0209126_1013578

Overview

Basic Information
Taxon OID	3300025119 Open in IMG/M
Scaffold ID	Ga0209126_1013578 Open in IMG/M
Source Dataset Name	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2559
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location Name	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.53	Long. (^o)	-107.78	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029003	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209126_10135781	F029003	GGA	MIDRMQRRSGLGLCEMCEKRPATRKAMFSAQYLQSTSTAIFDEGSLLGVELTKRVYEECLKKLQDAKNVTDLIFERL
Ga0209126_10135784	F029003	GGA	MIDQMQRRSAPGLCEICGKHPATRKAKFNAQYLQSSSMAIFDEESLVGVEVTKRVCEECLKGLQDAKNVTDLTFERL

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