Scaffold Ga0209126_1006769

Overview

Basic Information

• Taxon OID: 3300025119
• Scaffold ID: Ga0209126_1006769
• Source Dataset Name: Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3715
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Colwellbacteria → Candidatus Colwellbacteria bacterium RIFCSPLOWO2_12_FULL_46_17 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026216	Metagenome	198	Y
F034089	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209126_10067691	F034089	N/A	PNTLKSTDLGAIGPKLVTWVKEKSLRESNIALSTYQYLQPELLSS
Ga0209126_10067692	F026216	N/A	MCSMYENIDDGAFIGRKQYFVLMFKVNFLGLGLLSSSFSFFNIYIYIHNASLTHVTSFRLMTPRPVGLRALGVETPLRA