Scaffold Ga0208790_1134286

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208790_1134286

Scaffold Ga0208790_1134286

Overview

Basic Information
Taxon OID	3300025118 Open in IMG/M
Scaffold ID	Ga0208790_1134286 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	695
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.205	Long. (^o)	-77.515	Alt. (m)		Depth (m)	78
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000563	Metagenome	1022	Y
F018527	Metagenome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208790_11342861	F000563	N/A	KYKFKIIEEGKPEEEKEGMSFKKILKSLVEPNPKWTGSLSYENKKGRYVVHSIKEGKKYD
Ga0208790_11342862	F018527	AGGAGG	MIDIDKLIERNDKAFAEVKEKLEKLFSVETTTPEKYRDGLYEQIEKIVDQLSVLHRRGGYYEFKKSNNNKHEHNA

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