Scaffold Ga0208790_1097107

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208790_1097107

Scaffold Ga0208790_1097107

Overview

Basic Information
Taxon OID	3300025118 Open in IMG/M
Scaffold ID	Ga0208790_1097107 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	861
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.205	Long. (^o)	-77.515	Alt. (m)		Depth (m)	78
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F080157	Metagenome	115	Y
F090868	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208790_10971072	F090868	N/A	MSLEKTKKLYHKLVRQGIINKDIQMKEVKKMFHNVSKYNAKKDLKKIYEKK
Ga0208790_10971073	F080157	N/A	NCVKNQVRIKPYYDKWNLVVIEDIEEGSELTLKYTWYEPRKN

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