NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208790_1011813

Scaffold Ga0208790_1011813


Overview

Basic Information
Taxon OID3300025118 Open in IMG/M
Scaffold IDGa0208790_1011813 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3143
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.205Long. (o)-77.515Alt. (m)Depth (m)78
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063607Metagenome129N
F099142Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0208790_10118134F063607GAGMSVKINQAAFTQQLRRYAKVNRRSFKDIVNAKALDMAYQALKHTDAASASVIEYKLGAIGNKVSKSRKTGQLRKGKRILKENSFAARIVNSRRKKAGQPMIWGKDLEKAAQKLINMRVRAVRFLKSGWMPAIKKLSYAVERRDRRPWPKGLSKGRAATKGWGRPAKAELRPEAWVANSATNNSQQAISKIKAGLSRGMAAAVADMAIYIQKKLGRDYKKAGF
Ga0208790_10118135F099142N/AMSYADDIAEMIADLPVNYIIGVTTYTGAVNEISKGQDAGEGGFLDDFDLTIVAKKADHSSLPDIGSKMTVDSQVYRIEKITTTPADAAEVRFNLMSADR

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