Scaffold Ga0208790_1010691

Overview

Basic Information

• Taxon OID: 3300025118
• Scaffold ID: Ga0208790_1010691
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3332
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012401	Metagenome / Metatranscriptome	281	Y
F014127	Metagenome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208790_10106914	F012401	GGAGG	MIDGILSLEKAALEKLTEDRIASGSLGEEVEDLLSEAGIYWDTLNKEYFSIDVFQAETFKRLAAEYASQDYA
Ga0208790_10106915	F014127	GGAGG	MQQRINNTLGRMMITGDEKSWDYGFLESLQEQLTKRGSLSPRQEEILQQVEGRWSDEALKHRASWVDDWDKEKEEKFWIALQYYHKTGYYGNIVYKYLTTAGCRCAGAPSEKEYNKLVLNKYAAGVIRNVQAEPKFPVGGTAVFRTGARTNRGKPCVILKHGNTEHVTSHAKGAKPIQVLPIGSAAPIWTEERWLKKAKKRK