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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025118 Open in IMG/M |
| Scaffold ID | Ga0208790_1000644 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16276 |
| Total Scaffold Genes | 45 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (77.78%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.205 | Long. (o) | -77.515 | Alt. (m) | Depth (m) | 78 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005524 | Metagenome | 398 | Y |
| F013357 | Metagenome | 272 | Y |
| F017121 | Metagenome | 242 | Y |
| F042854 | Metagenome | 157 | Y |
| F062171 | Metagenome | 131 | Y |
| F064629 | Metagenome | 128 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208790_10006441 | F017121 | N/A | DRLDKIEANLERYEKLADENESLWQYLDEQKEMDNLWTGTSEEFESEVSDMMVRQMKTQGDA |
| Ga0208790_100064411 | F042854 | GGAG | LRKFDRELEKYTRNRMRELRGEAPSPWEDDPFIEAYTSRRIQEMRLEHEMEQREIDLDNVALGGYTVATMEAYSGKT |
| Ga0208790_100064413 | F013357 | AGGA | MARTRYIPGALVEARSSKYGKGFGIIVRGPTMDTKASGRYRDLENPQPWFVVHWFEKPGSVDSYYMRRGKGQVEMTKNQIKLLRKK |
| Ga0208790_100064414 | F064629 | GAG | MTRLYQECAGNLDDNPGRKGLRNFTWTNDAIRGWEQIWHQLWRFGYKWEWQNGDRYARGYGETYNLFAVHNDAVRLDMAIPLPGIEVVEEARELILTDINDAHELDQLVGTIDRWLKKHYAP |
| Ga0208790_100064435 | F062171 | GGAGG | VKIGDLVSYGTMPHWKLEGCLGILVRKLQWNDQWIEGINWDGDPAWWIQYVGDEAPTWNYEEELTLVTEGN |
| Ga0208790_100064436 | F005524 | AGAAGG | MDIGDKVQHFGTGSVGTVIDSSYEVETPFQQLCVVWEDDLAPTKDSWERREALSIIPHIPYDFHIND |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |