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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025115 Open in IMG/M |
| Scaffold ID | Ga0209835_1004594 Open in IMG/M |
| Source Dataset Name | Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 52m metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5990 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (55.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Rwanda: Lake Kivu | |||||||
| Coordinates | Lat. (o) | -1.78 | Long. (o) | 29.2 | Alt. (m) | Depth (m) | 52 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004208 | Metagenome / Metatranscriptome | 448 | Y |
| F020114 | Metagenome / Metatranscriptome | 226 | Y |
| F020144 | Metagenome / Metatranscriptome | 225 | Y |
| F034149 | Metagenome / Metatranscriptome | 175 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209835_100459410 | F004208 | N/A | MTYKLDPEKKAFSYTREELFECITKIVAHPHTAITKHDQSRALAIMVVFDDYFTNFCESDNNGGHYVAEREQTDFIDFVRFKLGIDDYDAVNVDEVLK |
| Ga0209835_100459418 | F034149 | N/A | MSITQGLVETENEEPGFEILHLSFRKKRSENMYGGPVDYYIGNIVFRLTNEDAKGRMKYILAENEELRVAPNEDLMNKYYEDLHFDFGLDNEDEGVVDEEDGQKYYPVNIINKHGIKDEDVFIRAHRRNMNPLHDFVTYHEKFDCYQMHEYFQDTPVVRGIIQYLQDMKDGKPNPSRTVYHEQFLNTLTNLCWWWD |
| Ga0209835_10045942 | F020114 | GAGG | MTKPQTFKHISRAIDNHGVHHLDALDEYGRHWYATMRQQEEPWLTYVQHWELRN |
| Ga0209835_10045948 | F020144 | N/A | MSNFYTLLPGTDVLRSKIDVLTWTNPENENETERVELTADNAGIFITSCSGGAREDMSIAQKDLAIALARAILEAYGVIV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |