Scaffold Ga0208433_1023327

Overview

Basic Information

• Taxon OID: 3300025114
• Scaffold ID: Ga0208433_1023327
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1748
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015219	Metagenome	256	Y
F019475	Metagenome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208433_10233272	F015219	N/A	MKNLPFAQWTRIENRHGGGIPDLYGIYGGQAIWLELKCIKQNSINISPLQISWNYNNFRHGGKNYYIVQDTRSKVIKLYEGDKGRELAKHGFNYEESIAVMEPPIDWKHFEFMIF
Ga0208433_10233273	F019475	AGGA	MSDIPLCQQCGKKLYANYGSRGLLSTPDRQYHYERFNTEQERSNFERDEMPENAFDLDRYSYSGNEFILRYHTPQQSRDGLFHSRSCFERWHLNHRNEIERLIKNMGEWKNPN