Scaffold Ga0208433_1002830

Overview

Basic Information

• Taxon OID: 3300025114
• Scaffold ID: Ga0208433_1002830
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5787
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007138	Metagenome	357	Y
F027810	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208433_100283011	F007138	GGAG	MFDKTIELTGEYPSDFKPTVPVKEVQKYFDAFEFYDARMIGGSKMFYREEHPDDLIVFNANVLMPGYGKVWYGDLNLTEDYKTLKKIAESLNTDLYVLWEMDARFGEEMKPLNELLDKAVWNTTEDNPTKEWYKKKMNKKYDKDTTQ
Ga0208433_10028303	F027810	N/A	MEKNERKIMEKIKVGIDAFNDLAQSHDAHVKEVERLQKEVDELKNLKLIDQDGELLLECRIGDEYHQLLLEVGLNTILEKFIKIKEENEK