Scaffold Ga0209349_1067283

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1067283
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1078
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004336	Metagenome	443	Y
F056142	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10672832	F004336	GAG	MKFIRNMLFSTGRYPSTMGAGGQQDVDFCRYIEWMWFKRCMWLLGIGFGFGGVGLYVGYFYEEVVLDYGMAVWGVAWLYNGFLLFVMAVSIILSMLKALVVKAFVSPEVQVGQAATRTAQMMRKGGL
Ga0209349_10672833	F056142	N/A	VSCDELLHAVVENLTPTDIFRWETPVSVSKMVPVKNVENTVNAVLSQHSLESLVDEEGFAQKAYVEFHDDKLDFKPNFRRISIYTYHPKWIPMPDGAEPIGYEVAYQLSREFKRDMYEKMDSQKNAYVDVVRP