Scaffold Ga0209349_1038016

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1038016
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1569
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022285	Metagenome	215	Y
F101914	Metagenome	102	Y
F104033	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10380162	F022285	AGGAG	MPKIKKPQTLIQWGNEEVTALELFKELDRLVAQPVMNLYEMDGDMYLSDYRKLSDAQWRINLALKKYKGEVA
Ga0209349_10380163	F101914	AGGAG	MVNNYTCSRCGCVHWDELKPISCIMCDNGEFYDSPDDFYDKEKLSKQTNYVKEKKDAED
Ga0209349_10380164	F104033	AGGAG	MIVFNDSYKSEGFEVAIEEVNKLLVDIGLKLEYNFIEDFVCDDGEYAYTLTIERFKELDDGKQLHLL