NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1037372

Scaffold Ga0209349_1037372


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1037372 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1586
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030873Metagenome184N
F068116Metagenome125N
F089401Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209349_10373723F089401N/AMVEKNICQNPKCCNDDTKDRWNKKIGRYQSRKAYFNNEHAYRILSYFCTTSCANKWLDENIENIIERKHCPNKIVEKIIRQ
Ga0209349_10373725F030873GAGGMLFKRNDKIAIVVKPKTHNGEVNEKDYFTRYGEMRKDSKFLVSKNIITFWDTQKDSFRSFNLSDVVSITNLSRTPLEINKKEQEKKEREKLKGYNCLSCKSKLTMDYRNKFDSNYCGDC
Ga0209349_10373726F068116N/AYTPLNRKVKMRTQISDYELITFFNNLKEIIQAQKELNHVLAKRITNLENRLEKKQSEVIDVV

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