NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1011917

Scaffold Ga0209349_1011917


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1011917 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3322
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003330Metagenome / Metatranscriptome493Y
F030754Metagenome184Y
F036923Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0209349_101191710F003330GGAGMRKRDAWDEPIPRVGDVVMSLPLEGDPGTVVKILQVNANGAWVVAVKWFTWDGGRTTEEYINELRIVSEV
Ga0209349_10119173F036923GGAGMKIELTDDEVTTMMVALDNYGDAKRLEWAESRDDADLTEAGSAEWCWQKLFGAQQKFRNSIADAIGEGEQPSTTIDPFTLPTWTE
Ga0209349_10119175F030754GAGGMSRRHNGNNAFALANGSRLAAHSTHGVTCTFVGGCRVFDANINKKHENHWLCERHGGANNHSRANARDEEYANGIPGAERRMRFARFRAKQRKTPAFTGHVPSFLDERAPKPKPKKAKPPVKVQAKSHKQLRREAALAELGMTEAQFQAVFGDN

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