Scaffold Ga0209349_1011917

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1011917
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3322
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003330	Metagenome / Metatranscriptome	493	Y
F030754	Metagenome	184	Y
F036923	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_101191710	F003330	GGAG	MRKRDAWDEPIPRVGDVVMSLPLEGDPGTVVKILQVNANGAWVVAVKWFTWDGGRTTEEYINELRIVSEV
Ga0209349_10119173	F036923	GGAG	MKIELTDDEVTTMMVALDNYGDAKRLEWAESRDDADLTEAGSAEWCWQKLFGAQQKFRNSIADAIGEGEQPSTTIDPFTLPTWTE
Ga0209349_10119175	F030754	GAGG	MSRRHNGNNAFALANGSRLAAHSTHGVTCTFVGGCRVFDANINKKHENHWLCERHGGANNHSRANARDEEYANGIPGAERRMRFARFRAKQRKTPAFTGHVPSFLDERAPKPKPKKAKPPVKVQAKSHKQLRREAALAELGMTEAQFQAVFGDN