Scaffold Ga0209349_1006762

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1006762
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4777
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034142	Metagenome	175	Y
F037679	Metagenome	167	Y
F050666	Metagenome	145	Y
F079940	Metagenome	115	Y
F084093	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_100676212	F084093	AGGA	VALKSISIHGPQVGDIIQVKECYWPTVGLHGGLVTRLVRWPEELRHLVECVIFQDPNLANPVQLQTRFVEVISRA
Ga0209349_100676213	F034142	AGGAGG	MMIKQFNVGDLVRFQHPSTGTQVTAKGLAAQERYVRRHMPWQYEIGLVVANDCVQGCVVSFPSRQTAVSTLSLEVC
Ga0209349_10067624	F050666	GAGG	MKISNIVNTLLAQARAPRHAEVSGSWSVCIPADGAVQRYATTSLVQAEATLNEWLLAGWPAWIEDNNGNLIHSVQQSSNELN
Ga0209349_10067628	F079940	AGGAG	MTFTELVIMSVAFGVSLGYLIGIIDYLADNGWRFDELA
Ga0209349_10067629	F037679	GGAG	MARPTKQRMKLGKTSSKRVERTTRGFGQRMHSRPMPAHIHFRAYTPEGELCGVAQRNDTFMVALFDQNERALCPPVVFHGAQARSQAATLAGQLTGRKVSF