Scaffold Ga0209349_1006029

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1006029
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5150
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F011190	Metagenome / Metatranscriptome	294	Y
F071758	Metagenome / Metatranscriptome	122	Y
F102085	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_100602910	F102085	N/A	MATSIHIFDNIDIFNKIYGTFIDDIEYKMPLLDLYVKGNKLWIVTNSNDMKEQPRLNTSLVHFRQGSIKDWEEGDEKLVTHGKLKFNSKTNQIEFFPRKLRKPLLSLRVGRYFGDDHDKKYDIDYDNRFYDFKNDRMIFILEKK
Ga0209349_100602911	F071758	N/A	MSDHKCTKCKIPKYGYTDGRHSIFLCFKCGRYDGISGGDPTFIEEINKEPMVLLAMIKEKLLVPIS
Ga0209349_10060294	F011190	N/A	MIRQSIHNFIGGLKKSFSGKDYLREINQCDKCGKPSFFNSCLKCETDEAYRGYGNHKKDQ
Ga0209349_10060298	F001235	GAG	LPEKLETNENANDMTKKLWEKHQSDEFTAVNNYKEGVCLGCMKVDRAAATIADICGDCASKKGREPLLAKVCDKYYGLCFFCNKYKFNIEQVNGRFCNTCHSRIAKITKEYNKKGGFMGVDPFWISLKKKHGKDWKHLMQGNNKFNRR