Scaffold Ga0209349_1005409

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209349_1005409

Scaffold Ga0209349_1005409

Overview

Basic Information
Taxon OID	3300025112 Open in IMG/M
Scaffold ID	Ga0209349_1005409 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5523
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (54.55%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049238	Metagenome / Metatranscriptome	147	Y
F056918	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_100540910	F049238	AGG	MSRLLDEIIKEQARLKASGWKPKFTGDTGINVCQVMIDNDIKPRNEWDEALVETFKEIKNGKSTN
Ga0209349_10054092	F056918	GAG	MKLLKVGDIVITVFLGTPEECEVIEITDKKKRLYKLRMKSGTILPDVTWYKLLDAKQKKNKPWHIVKYIGHKDPKVIEKDKIQKSDLDKVIAKQKNFIRGEIKK

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