Scaffold Ga0209349_1004689

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1004689
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6001
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042378	Metagenome	158	Y
F091872	Metagenome	107	N
F093713	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_10046895	F042378	GGAG	MNVTDAITEVQQPRSRYQLIHFVLGQHDTAEMQFYQLCIELQDMGYKLRMAELNVRKTEIEITRLLETGDELDAIEAEEKQVGLEQTQIVMKGAQREIAILEDIFNECQHYTRDEIEHAQPEYWQARLTRQTNLQMMSGNVQWAQLDSMRQIGLLDDLVEAREAQLAEQVKLELAE
Ga0209349_10046898	F093713	GGA	MEDNMNDILVRAGKTWLQTFAGLLVASWASRTINIETLDPLQELSTIAGFAFASIPAAVSVLQNSLKLAKPGA
Ga0209349_10046899	F091872	N/A	VPELVASVGIIAAATISAISAVLVARLRLDYRNQNGTQAVQVDLLREINRRTTRIEDRVNDHAERIATIEGRQDSRPCEK