Scaffold Ga0209349_1004358

Overview

Basic Information

• Taxon OID: 3300025112
• Scaffold ID: Ga0209349_1004358
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6276
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013357	Metagenome	272	Y
F019113	Metagenome	231	Y
F028360	Metagenome	192	Y
F032335	Metagenome	180	Y
F039585	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_100435812	F028360	N/A	MKKKYVPQLTMLKVEIKNDKESVLTIDMSDEFVVWFKKKHKLKRWAPARFTKWLLGVLQEQVK
Ga0209349_100435819	F039585	GGAG	LLCLASVLCARTSSLKAQEIDTEKCTEYFTEIMEAQKFRQMLMIGADVLIERYERGELDKKELDSTLAVWHNAESRLRQKVTKIYDVAYSEKCFENESKRTKRRDAP
Ga0209349_100435820	F032335	GAG	MKVSELKEGMLLRFKEPRIYKFMRDSGDDHWLDCGPWDPRQTLKWVQKGQPLMIYLGQEKMNAPSHYGGFWNVRKVSVGGRVAWMFPDAWRYVEAL
Ga0209349_10043584	F019113	N/A	MEQWRDSNFEVGDLVRDTLNSGRGNYGLGVVVATDSGGLLEEEVRVLGNEQTYADQDIPGKRYDVYFNKFERTITFHGDYLEKV
Ga0209349_10043586	F013357	GGAG	MARARYIPGALVEARNSKYGKGFGIILTGPTMDTKAATRYRDLVNPQQWFTVQWFEKPGNVNHWAWRRNSGQVNMTKNQIKLVRKR