NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1002411

Scaffold Ga0209349_1002411


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1002411 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8903
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (63.64%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002100Metagenome593Y
F002150Metagenome589Y
F003270Metagenome496Y
F008596Metagenome331N
F018017Metagenome / Metatranscriptome237Y
F021554Metagenome / Metatranscriptome218N
F026289Metagenome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0209349_100241112F002150AGGMVAIQSVGLARGIGKRGTKASGEFLEKKLGYNFVDLVTKLTLFYVIAFLIAKYMEAIIYFQGGLSTVAGFFGIKMAQADQLPKQWVELFVDTNQQTYTSTPTAPGQFNPPGWDRPYDYGTPEHQEAEPYLFPEKEVKFKFWDLVNAIVIFYIGWEAYKYYRNGGRDFLTMAIFSLMGLMIGVLSFSKFLGKFSLNRFQEENK
Ga0209349_100241113F021554AGGMIIEEIPFFTEFVILGLVLGFGYGFTKLFLNHAKDKNKIIRKEKKVENDNKLENELDKYLDNAPAIIHHLESEIANLKEKGSTPEQTQRLESELNQARTLQKYEPIIRIAGKPLLKKAMSLLDNFKV
Ga0209349_100241114F002100GAGGMSSFKPALIKPVYDVANFGHDNSLPLNCLSGSTATLTPSTATFVQVLEDGRVPIDEVDLFIMDSDKMAMVHQGNDTDFDVSWEWSPDMSAQAYQISFNFGVAMKCSAYTSGNFKISNVQVICKQVGGGEGDFTYINKIIDPGMTNMAGVAEQVAIINFSTTVSAKVFDKPLTFQIKVNTDSGTGTYQTGIIPLFCYISPAVPKTWTTSSVLMHIHADLAHAFPIFRDEDNMNMVDTGIGL
Ga0209349_100241115F008596GGAGMSGSWDIATATSIGTGTAKTQINGGNNLTKPTQAVNLVEVVPYISSSGAMTAGESLAVTLEIDSFSVDLLPKRIIVPPIQSGLGTTITQVNPLLEAYECNTGLQEGATSQFILSGTNQIAPTVATNLACALHYSTLPPNRPEHFYHKPDNETNFTTATTTSGNNFTINDGMWLEDMYVSVFTAVYTVSQSLTGYGEFSSNDFGNSLPLKVPMQPGCASLGATGTQGILALASYHNTHMPMKTSCKINTSFTNDITQTGTTSFIMGVGYTKQ
Ga0209349_100241116F003270N/AMARKRRRRKNKTSKNKSIKSLARTWANRLASPVAFWSQLSEKDYQVLNASSSYAGADYLTKLKVASNILTGSLTGRVLFSDQYNPSPNGQPRINPAGVINKWTGIGIAGKIYSIVGKQMGLPESATIGRIGTKIIYGGAVGGFFDPPTPSGRVTTYAVTPNVMVQNRATTQRRHSQFQSNLNYVPPDSFDQSTGSAFR
Ga0209349_100241118F026289AGTAGMNLMEEKKPKAKNQDEAFIDTLVEMLAEPHHDLAWNEKFKAVVRKHFDI
Ga0209349_10024118F018017GAGMKNDSLNADNTTTKIDSLWANQQKIIPIPPLSALKLHGDNCGGFRACHTCRGTRFVYIRSKWDNRITYKKCMACSGSGSIDTRTLN

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