Scaffold Ga0209349

Basic Information
Taxon OID	3300025112 Open in IMG/M
Scaffold ID	Ga0209349_1001564 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025112 Open in IMG/M

Scaffold ID

Ga0209349_1001564 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11297
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (62.96%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

11297

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (62.96%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003270	Metagenome	496	Y
F008596	Metagenome	331	N
F025299	Metagenome / Metatranscriptome	202	N
F089026	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209349_100156418	F089026	GAG	MTMPKKSYKDRCITEFNEYSDKSIRHFIQVMKQWRDLKK
Ga0209349_10015644	F003270	N/A	MARKQRRRSSKRRNGSKSIKSMIRQVVSKGSAPLAFWQQLSEKDYQVLNADGNYASLDYLGKLKVASNILTGSLTGRVLFADQYNPSPSGQPRINPAGIINKWTGIGIAGKLYGKLGKSMKLPEASMIDRVGSKLIFGGAIGGFFDPPGNPGGYVSTANVTPNVMVQNRAQTDRSYAVAQRNRGFVPSGGFDYSTGSAFR
Ga0209349_10015645	F008596	GGAG	MSGAWDIATATSLGTGVAKTQINGGANLTKPTQATNLVEVVPYTVSSGAYTAGESIALTAYLDSFSVDLLPKRIIVPPVQAGLGTLINVVAPILEAYECNTGLAEGATSQFIVSGQAQVANTVAPLMAMALHYSTTPPNRPEHFYHKPDNESTFTTATTNAGNDFTINDGMWLEDMYVSVFAGTPTVSQSISGYGTFSSNDFGNSLPLKVPMQPGACGLAGTMTPGNLQLASYHNTHMPMKTSCKISTSFTNDVTQSATTRFIMGVGYTKQG
Ga0209349_10015647	F025299	AGAAG	MIIEEIPFFVEFVVLGIVLGFGYGFTKLFLNHAKDKSKIKRSERKAKEANSVEDELDKYLNNIPAITQHLEIELMNLKEKGATPEQCKSLESKLDLARKAQQYEMPIRMLGKPILKKVLNIVDKFGV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209349_1001564

Overview

Ecosystem & Geography

Associated Families

Sequences