 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025112 Open in IMG/M |
| Scaffold ID | Ga0209349_1000677 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17060 |
| Total Scaffold Genes | 36 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (86.11%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 18.92 | Long. (o) | -108.7999 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008590 | Metagenome | 331 | Y |
| F009562 | Metagenome / Metatranscriptome | 316 | Y |
| F012507 | Metagenome | 280 | Y |
| F037423 | Metagenome / Metatranscriptome | 168 | Y |
| F037424 | Metagenome | 168 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209349_100067726 | F008590 | GGAGG | MKVGDLVTYAFQAARWQKGQSVHVGLVVETGKYTGNCDVKVLWKGGAVVLTEASQHLSLVDDSLTK |
| Ga0209349_100067729 | F009562 | AGGAG | MFTAIPLIRTDDDSKLTAIERTAIGCEQMITAIMMQATMDDPQVTAAEREVYTTLSVATIIPAEA |
| Ga0209349_100067733 | F012507 | N/A | MWTDALKIGDLLYCRRDNKPAIILDSEETARAKYGDIANKRWRFKLHIDGEQGWLDEVKLRALYKLP |
| Ga0209349_100067736 | F037424 | AGGAG | MSWSGTVTCSHCYRQGHNKRKCEKLTEQISDKYTGNVLAAASERERGNENDAVWYDERAENYRQQYIKRTKIDLATGKQVKNKTAKAERMKNVTCGYCQLRGHTRRVCEVVKRDKLVFIEESRRVRAGALEAARETGIGVGSMIPMRLNGYNADGEWGTHTSLRYIKSVDWHTVTAARAGLWVYHVHASKLASANQSRWTARDKILKMEENFKEARAVAELADGPAPCASLIPSLDPPAGWLDCEPSTIDVAAAFPTTGNKYEKQRGHDYAWPSGITAEVIRDLGLEEHWKGRF |
| Ga0209349_10006775 | F037423 | AGGA | MSKYLQDPEYLFSIITALVKKNAGQITLSKEEMDNVSKGDLIGMYYEPKTGNLILKEVEPKDMLQATTIIRDKKGTDKVYDN |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |