Scaffold Ga0208158_1032200

Overview

Basic Information

• Taxon OID: 3300025110
• Scaffold ID: Ga0208158_1032200
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1335
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.401
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054784	Metagenome	139	Y
F088736	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208158_10322003	F054784	AGGA	MKLENLGKNQTRLIMQIQDHTENFTWDKDIYFSYGTPVLVVNYRDAEIHETAEKYSVTTSKHINQFKRMCNRYDDRGGPMTFEHGREWQTFMAPESRMRVVAEQC
Ga0208158_10322005	F088736	N/A	LIPNTIENKIKVRQAVAQFMVERVLTKDEILQLAMDQLEENYFYAKHTIADLARMVKETEIPSQINFDGTTGPSQPNHMLCYGSFHNEEPENQYYFFTKEQDYEYSACEVKGVR