NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208553_1038243

Scaffold Ga0208553_1038243


Overview

Basic Information
Taxon OID3300025109 Open in IMG/M
Scaffold IDGa0208553_1038243 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1215
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)210
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040059Metagenome162N
F084823Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0208553_10382431F084823GGAGMGKALKKKDDNVTQLSEYKGFKELQKSVGGLATITDK
Ga0208553_10382433F040059N/AHAISVGSEVKKGASWDVSTAGTYLVSYYCDGTNVYVSASEALS

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