Scaffold Ga0209398_1011462

Overview

Basic Information

• Taxon OID: 3300025106
• Scaffold ID: Ga0209398_1011462
• Source Dataset Name: Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Big Spring (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2905
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Ash Meadows Big Spring, Nevada
• Coordinates
  • Lat. (^o): 36.37
  • Long. (^o): -116.27
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031386	Metagenome / Metatranscriptome	182	Y
F072067	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209398_10114624	F072067	GGA	MLPNFALERSGTALSVRAAVALEILAPAARWPRRARPAQRGR
Ga0209398_10114625	F031386	GAG	MLLNVRDQRRRALGAPLADRRLSAPVLVPASGVPTRDDRCIA
Ga0209398_10114627	F031386	N/A	MSNVRDQRRRAVGAPLAGWTLWEPLAALASGVTTRDDRCIA