NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209398_1011462

Scaffold Ga0209398_1011462


Overview

Basic Information
Taxon OID3300025106 Open in IMG/M
Scaffold IDGa0209398_1011462 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Big Spring (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2905
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameAsh Meadows Big Spring, Nevada
CoordinatesLat. (o)36.37Long. (o)-116.27Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031386Metagenome / Metatranscriptome182Y
F072067Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209398_10114624F072067GGAMLPNFALERSGTALSVRAAVALEILAPAARWPRRARPAQRGR
Ga0209398_10114625F031386GAGMLLNVRDQRRRALGAPLADRRLSAPVLVPASGVPTRDDRCIA
Ga0209398_10114627F031386N/AMSNVRDQRRRAVGAPLAGWTLWEPLAALASGVTTRDDRCIA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.