Scaffold Ga0208013_1051871

Overview

Basic Information

• Taxon OID: 3300025103
• Scaffold ID: Ga0208013_1051871
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1112
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029745	Metagenome	187	Y
F073529	Metagenome	120	Y
F077179	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208013_10518713	F029745	GAGG	VARKAPQVGDVVKSLVTGESVAGYIVAKEGIHVWVRFFDTDLDAGSSWDVYTRRDTLEIVSYANSC
Ga0208013_10518714	F077179	GGAGG	VKQNDYKPGDLILFFSGNSRFEEGPEEIGWIVRRDHDDPSEPAVMVGFPEPNKNGLLHYYDVELREWEKAGTIEVKRG
Ga0208013_10518715	F073529	N/A	VACLAVNYLRWQMKIGDVVMLRKGRYNFSATEKAKWTWTDVLGVITDDRGFVDGTAEYKVYTVDNKHSWEHIEDLRIPD