Scaffold Ga0208013_1048074

Overview

Basic Information

• Taxon OID: 3300025103
• Scaffold ID: Ga0208013_1048074
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1166
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004336	Metagenome	443	Y
F006818	Metagenome	364	Y
F010572	Metagenome	302	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208013_10480741	F004336	N/A	PSTMGAGGQQDVEFCRYIEWVWFKRCVWLLGIGLGFGGVGLYVGYYYEEVVLEYGMAVWGVAWLYNGFLMFVLAVSIILSALKALVVKAFISPEVQVGQAATRTAQMMRKGGI
Ga0208013_10480742	F006818	GGA	MAGPPQMQTLARKRALSQKAEEPTREVAPAPNVLTRAPVSQQMMPSAESMSDDELDLYVRRLTMRHKRLSSKWWGLRRKHGKDECPYCGMNTGGGFCKIHQRDYDEYLGALSTRQNRSFG
Ga0208013_10480743	F010572	GGAGG	MSGYHGSPSGYMNPVAVDKIQHPDYDAKAAENTTMRLVQYLYPVIKNSVEMLESLCKETDVQVPTDLADNMEFLKTVYNTQIDWHPR