Scaffold Ga0208013_1002316

Overview

Basic Information

• Taxon OID: 3300025103
• Scaffold ID: Ga0208013_1002316
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7930
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035480	Metagenome / Metatranscriptome	172	Y
F035977	Metagenome	171	Y
F057667	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208013_10023161	F035977	N/A	AHNSLVINTDNYKTMTKKTLQQEIQELKVLQYGATKTLTPGVQSLIYTLSCVEAEEFQLQTFCDLHGTCYQVTGKSGDIYSRMRPEWQQLKEARMRKQAIIARLEKWVGEGVEEEDELKEFLK
Ga0208013_100231611	F057667	N/A	MDILLENWEAVTLALLIAARAIFSLLPSDAPAVQVFGWIDT
Ga0208013_10023169	F035480	GAG	MAATVQILGANELYKRIAKLAKWSEKDSQKLVSIGERVGSVYANYLKANIKDLDKDTSLRGRKIKKGQLRRSAGTWQPKKKQNTVLAGPRTKAIGRKGKTTKYADGFYAHIVEKGDFAERFGGKHKTQNTGVFEQGIKATQNRSKKLQEILLRREFSQYVSRL