Scaffold Ga0208013_1001823

Overview

Basic Information

• Taxon OID: 3300025103
• Scaffold ID: Ga0208013_1001823
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9383
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010273	Metagenome / Metatranscriptome	306	Y
F076175	Metagenome	118	N
F103402	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208013_10018232	F076175	AGGAG	MILEALKGLAALPKLVEAVERIGDKLDDKAALERLGDKRNRNRAAIDGVLESSSGQRGEDDSSPAVSGGDTGGS
Ga0208013_10018233	F010273	GGA	MAIGGLLTVMATEWFNLSPEVTENLIGAVMVIVPAYIGGQGLVDCFKEYAAKK
Ga0208013_10018235	F103402	N/A	MANTYNWSRLEPLVKDEDNLDNVVVKLVCGMTASDGNGNSAYIDTMHTLAAPDPSAFIPFADLTQEWAIEIADAVAESDGFKDSLDQQIEAAKLRPSPKPFSWQQPAPEPSE