Scaffold Ga0208666_1072434

Overview

Basic Information

• Taxon OID: 3300025102
• Scaffold ID: Ga0208666_1072434
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 905
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020816	Metagenome / Metatranscriptome	222	N
F031261	Metagenome	183	Y
F052274	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208666_10724341	F031261	AGGAGG	MRTKTYVMTVEKNSDEVLEQLNKLQQVRQSVSLLNKHSTRKHYVKCQGRWGRKNPDYNQRTIPFCPLDKAVKWDVYIYQAR
Ga0208666_10724342	F020816	GAGG	MKVYEITVSTTIQIDSVDDYAESKDHAIDIMWDRWGVYKDTLEVTKVKTWEEDDEC
Ga0208666_10724344	F052274	GGAGG	MNNKTLYKRLDEICAREHIVNKLSANKYRTFVDFLYDDIRTWDEPMNVSEVDIIHRIGEH