Scaffold Ga0208159_1020879

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1020879
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1585
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028039	Metagenome / Metatranscriptome	193	Y
F041493	Metagenome / Metatranscriptome	160	Y
F086164	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_10208792	F041493	AGGAG	MTTEQDYYVKKIENNDDHLYTTIYDSISGDPFKVKTDRVGHYLSKMKRQSKLSGENLVFAGKWIPAFVKTQKEIIGSPSSSLTERVAPLGQVKAGKRRRGRRGRKK
Ga0208159_10208793	F028039	AGGAG	MTTTVQLDRWNTILKEIKFDNKWNETLKNYLKEQNLDKLPTPEWTENDPTMAYIYLPTRDLKGNLVRMDKTKVRMFPESIVGYLEKGGLMELPVKVEAPQRSQKKEQLPKMETEKPTLDKKLENKIGDLKDE
Ga0208159_10208795	F086164	AGGAGG	MPFGHQKLTVDATVRALTVPDGVNFAQIKVETAAIRYRIDGTDPATAVGVLVSAGDAFTVYGEDTLSTIKMVEATSTDAVINVSYGVANN