Scaffold Ga0208159_1002925

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1002925
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5785
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070211	Metagenome	123	Y
F085807	Metagenome	111	N
F095344	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_10029251	F095344	N/A	VHLGDIIRLQDAFETAITHFDLKKKGGIGEYGEDEGKYTQFYHSDYVCHTDPEAFDPSKVEKDDE
Ga0208159_10029257	F070211	AGGAG	MYDPVVINILEKNVKDLQEQLKNSHIRIKQLNEENYKLRRELGVKKDNGKTITNNSDGVWLGDAEMPDAEHLKDE
Ga0208159_10029258	F085807	AGGAG	MSNLWDKDEKRLYRKLFKEYKKEGCSNEEAKMYAKLDCKNSIGFDIDSAEKLYKNSLKDF