Scaffold Ga0208159_1001170

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1001170
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10017
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (45.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007825	Metagenome / Metatranscriptome	344	Y
F042914	Metagenome / Metatranscriptome	157	N
F048644	Metagenome	148	N
F081364	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_100117015	F042914	N/A	MLDKIKKVIKKIKPTAKKAEPKFNNMNDLQKGIAVNKEVKSETVSETKSSLTFGK
Ga0208159_100117016	F081364	N/A	MGSPSASTSGNTGSDAFVNKKSKVKPVKRDKFGYTVKQNPVKEIISGGGAIGAITKPIRKKTEEINRKFYEEKVVPSGKSTAPNYETYMKDRLAGKTDAYGNKTTSTGDGGGATESSGVVVQAPKVVTTPTESEVSQATTTDAEDPILLRKRKAKARGRSPTILTGVTGVTGSLTLGKPSLLGR
Ga0208159_10011702	F048644	N/A	MPQTIELKEVFIYFVICKKSKKIFYIGESQNGRSRVQLRRFDDKTCDVKVITSKKIKCLNNFYFRRYYEARWIYKFKPEYNLQINTPPTLNYFLIKMFLWNENPQSNWIVPFSQNCPFKCKFLPHTQKHNKYIYNGYTKVWEQIDVNKKLFINDEKAFHYILNNKIEKTLGTKTRKTFKKRTEKLHN
Ga0208159_10011709	F007825	N/A	MTIQLYYKTKKELKNNVGSELDYSETNIFKNEYTSNGVIIGCDPDRKWFAKVTIKNNLIERVQ