Scaffold Ga0208159_1000671

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208159_1000671

Scaffold Ga0208159_1000671

Overview

Basic Information
Taxon OID	3300025101 Open in IMG/M
Scaffold ID	Ga0208159_1000671 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13420
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (38.10%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.198	Long. (^o)	-77.499	Alt. (m)		Depth (m)	38
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042287	Metagenome	158	Y
F087057	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_100067110	F042287	GGAGG	MQKYLNALGAVGFVLAACNTAVIVLAVVRGPAIIDKNLSNIQLLMIEKMHETLSESVTEAMPGQIGELMPSTTGIALPF
Ga0208159_10006712	F087057	N/A	MIRKRIVFAVFVGAMTMLSGAILSGAALVYYTGFLDGTKQCQAGKLK

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