Scaffold Ga0208159_1000583

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1000583
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14415
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (9.68%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005351	Metagenome / Metatranscriptome	403	Y
F009959	Metagenome / Metatranscriptome	310	Y
F016813	Metagenome / Metatranscriptome	244	Y
F033810	Metagenome / Metatranscriptome	176	N
F051932	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_100058314	F016813	N/A	MLDLTKLPELNNTHEYLIDNPDYSELYERLNMKDMEDYLIVYSYLHNVSEVANELINNNVEFSHHSCHLSDESYLLINIKQ
Ga0208159_100058315	F005351	N/A	MYNPNSPSNWSWSKAFAEMEKTVKQAECTQQIVNHLHNYDGGVKKFTELSKDKQDLHYEILSQIL
Ga0208159_100058321	F033810	N/A	MSKSKQIHWNPDTIDHFIFISNYADVDQVLTQVENFVSIDCELQGDDTEKDLVEDLMNKIYERRYD
Ga0208159_100058322	F009959	N/A	MTKEEVIERVLDRMTTTMYNELDYYMFEELGYTETNDKYVEDADKLIDKIIKTIQQWQI
Ga0208159_100058325	F051932	N/A	MNLTQEDYDTLTKLRWLQINELAIKYPNDQEFGGKVRQLINNTN