Scaffold Ga0208159_1000013

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1000013
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61787
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 95 (87.96%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073439	Metagenome	120	Y
F077930	Metagenome	117	Y
F091881	Metagenome	107	Y
F094534	Metagenome	106	N
F096210	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_100001317	F094534	GGAG	MQIVKWIDDYRSSFAVVVECNDRSYLVIDDSYHVLIYSSDREGVISEYPEICKIEGKTLSEVISDNRTFLSNLRIWSKIDRFEVAQKSETVIL
Ga0208159_100001320	F096210	GGAGG	MAYEHNWNPKDKLTYDQLVEVLTPIVIELTDNAFAFRKWSDDGGTVVEVWIEEGLQGKIQPRLPPQCRGWRVVWVSCPTGYIKAFEIRK
Ga0208159_100001321	F077930	GGAGG	MEYHNFKEALDEAMDFIARLYPSSTWEGDVHDFYALLVKANFTNQIFMDYLKHAIDNKVYLPNNVTCVVDKGKISKVIIGGR
Ga0208159_100001334	F091881	GGAGG	VQVGDLVRIKKVWKSIYKGYEDTVGLVVYADCGYGGERPVGFRRIRIIHGDMQGQVYSVFAEEVLEVVKN
Ga0208159_100001385	F073439	N/A	MDTLKSAKHVTKSTKPITKPLFSIGDLVKIRGFGVVLAKSELGIVAKGPYSYKSVESYHELVYFEWWCYDILVGKELVRMMPENFLLEVKIDENKD