Scaffold Ga0208669_1058031

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1058031
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 870
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F042015	Metagenome / Metatranscriptome	159	Y
F091885	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_10580312	F091885	N/A	MNDITGIVVKNILQEKLEKCKVYYNTSYQYKDYDMSDYYKSEIKRLELQISKLCLV
Ga0208669_10580313	F042015	N/A	MYKKIDKVRAHREKLKQLLFNIPTEGRKVVKTITIEMSNQKFWPGYGNVSIDSDGPDGFTHWGSHEKNPMEYALNSEQYKSGEYQLIIK
Ga0208669_10580314	F000126	N/A	MRDFKITRKEGEWYYAVVTDSYGKVYDNYFEHAHEANKWIYYIWEKEDWFNSVNSQELLYNAIENCKKIDEENNIRKIM