Scaffold Ga0208669_1005999

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1005999
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3678
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011190	Metagenome / Metatranscriptome	294	Y
F019751	Metagenome / Metatranscriptome	228	N
F065664	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_10059991	F065664	N/A	MAGVAEIMCEYGAGDKVLQLEQFDTMGFYEYYGVTETFKDLQSLVKRAEDIQTSYDKIVIHDYSEFKLNFPKNKVVLIFHGSKLRSMEQTEIESVKEYPCFVTTSDLLDILPFATHLPAPVDRELFKKDVEGYGWIAINRSYQRDFVEKRIKDRYPDIEYYERNPGSIIRYEDMPDFLSQYKHYVDWKFTTDAEPVSLPDPSCTGIQALALGLTVHDKDGGTLSPHLLLIHDAKRVVQRFVDEIT
Ga0208669_10059992	F011190	GAGG	MKLLEGFIKGLKKSFSGRDYLRDINQCDKCGKPSFFANCLKCETDEAYRGWGKQ
Ga0208669_10059993	F019751	GAGG	LTRTRGPDLSKEFHDYISSQWMFFGRNAYQIADQINKDTQLMSKYGKTTASGVHYHIKQIQQEMENSISEDAMDTYIGEFIRARLGFEQDVIALEEIMADEKAKGFDNMDKELYLKFARTRHEIKLDSFKMLQDSALPLQVKKLKMERAKLRPARPMPEVEDKNGVSE