Scaffold Ga0208669_1005351

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1005351
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3947
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F021674	Metagenome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_10053514	F006383	GGAGG	MYDKMWKVQQPGTILRARHSGRRGQLALVLARANSGPRPSNGYPPTEYVKMQIVSTGERFEESLTNANNCWDIVSEP
Ga0208669_10053515	F021674	GAGG	MERETYNTRLKSNPENIPVGSLLRVKKHCRKNVTIRQNGEYGLLATTINNGKYITHDVLFPNGTRCIYMPLNWEVVSHVR
Ga0208669_10053518	F006867	AGGAG	MLYGKELAQSIQKRCNIQPGMLVRSTAGTTVSKVALVVGLSPACRFDRDYEGAEDHIFYTCQPVDGTPDFADYVTNMEQVS