Scaffold Ga0208669_1002475

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1002475
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6334
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F051547	Metagenome	144	N
F060433	Metagenome	133	Y
F071758	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_10024752	F051547	GGA	MIDPLLIATLSVIGGAILNTVRGFLGSSESTYDIKKFFGALIVAVFAGIAVAQTLSLAGLGITETVLIGLSVGFSVDYAVSKAKKTA
Ga0208669_10024753	F060433	N/A	MEMSSIIETLLIATILGMGGALYGFFRKMNSTQKDLCETVARLQKTLIILAKSVDRQSNRLHPDEANSELDDLVKELLRDK
Ga0208669_10024754	F071758	N/A	MSDHTCKRCEIPKYGYTDGTHSIYLCYKCGRYEGISGGDEDFIKDINENPMILLHMIKSKMLVPIS
Ga0208669_10024757	F001235	N/A	LPTELNTNENSNDMTKKLWEKHQGDEYTAVNNYKEGVCLGCMKVDVAAATIADICGDCAGKKGREPLLAKVCDKYYGLCFFCNSYKFNIEQVNGRFCNTCHRRIANITKEYNKKGGFMKTDPFWVSMRKKHGKDWKQIMGGYKKSNRK