Scaffold Ga0208669_1000227

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1000227
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23480
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014465	Metagenome	263	Y
F028360	Metagenome	192	Y
F040056	Metagenome / Metatranscriptome	162	Y
F062171	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_100022725	F028360	N/A	MKKIPPITMLKVEVKDENDSVLTIDLSDDFVKWFKKEKNLKRWAPKQFQNWLIEVLQHTN
Ga0208669_100022741	F014465	AGGAG	MKLRGMTMIGALVRDCSKMMKIVTGYKCTNKGEYIQFAGDHETAWYPLDSFEILSTED
Ga0208669_100022747	F040056	AGGA	MQTQLDLRIGSLVRWNGDDTEGADIDELGIVIKMPEDSAYYYIAWNITNTVSHHSPDMVEESLYQRQMEIISHARD
Ga0208669_100022753	F062171	GAGG	VKIGDLVSYGTMPHWKLEGCLGILVRKLQWNDSWIKGITWDGQPAWWIQYVGDETPTWNYEEELTLVTEGN