Scaffold Ga0208434_1075705

Overview

Basic Information

• Taxon OID: 3300025098
• Scaffold ID: Ga0208434_1075705
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 692
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002697	Metagenome / Metatranscriptome	536	Y
F028197	Metagenome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208434_10757052	F002697	AGG	MNIKYFSWFAKSRNAFINCRGVDEYEYEDKWSGKFKTFVSRQWTDLKGNPCYNFWDLDAEHPRTAVNYSVRKA
Ga0208434_10757053	F028197	GAGG	METDIIWILLFIGYAIGLIPIAYFGIVGTNEAIDYQNKLHKSYERSKKNERL